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AlphaFold Sovereign MCP Server
Open-source MCP server that composes AlphaFold DB and eight public biomedical data sources into a local SQLite knowledge graph accessible through MCP tool calls. Enables AI assistants to query protein structure predictions, cross-reference biomedical datasets, and explore molecular biology data through natural language. Designed for researchers and bioinformaticians who want to combine AlphaFold structural data with related biomedical knowledge without building custom data pipelines.
MCP unverified
Integration
| Transport | stdio |
| Auth | none |
| Endpoint | alphafold-sovereign-mcp |
Use Cases
| 01 | Query AlphaFold protein structure predictions and cross-reference them against eight biomedical data sources through AI assistants via MCP |
| 02 | Build a local biomedical knowledge graph from AlphaFold DB and public datasets that AI coding agents can query for molecular biology research |
| 03 | Enable bioinformaticians to explore protein structure data and related biomedical knowledge through natural language without writing custom database queries |
Tags
biomedical protein-structure alphafold research knowledge-graph sqlite open-source
Machine-readable: /api/servers.json
· JSON-LD schema embedded in <head>