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mcp-bionemo
Local stdio MCP exposing RFdiffusion backbone design, ProteinMPNN sequence design and Boltz-2 complex folding as typed tools. Its default simulator returns structurally valid but biologically meaningless results; real NVIDIA BioNeMo NIM calls require a live backend and a private NGC API key or self-hosted NIM endpoint. Independent project created October 6, 2026.
MCP unverified
Integration
| Transport | stdio |
| Auth | api-key |
| Endpoint | mcp-bionemo |
| Install | Clone repository, pip install -e . in a virtual environment, then register mcp-bionemo as a stdio server; simulator needs no key |
Use Cases
| 01 | Prototype a protein-design tool chain with simulated outputs |
| 02 | Design a backbone through an authorized NIM |
| 03 | Co-fold a binder and target with a live backend |
Tags
bionemo protein-design rfdiffusion boltz-2 simulator
Machine-readable: /api/servers.json
· JSON-LD schema embedded in <head>